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Starr AL, Gokhman D, Fraser HB*. Accounting for cis-regulatory constraint prioritizes genes likely to affect species-specific traits. bioRxiv doi: https://doi.org/10.1101/2022.03.29.486301, 2022.

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Weiss C, Harshman L, Inoue F, Fraser HB, Petrov DA*, Ahituv N*, Gokhman D*. The cis-regulatory effects of variants separating modern from archaic humans, eLife, 2021.

 

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Gokhman D*, Agoglia RM, Kinnebrew M, Gordon W, Ahituv N, Wysocka J, Rohatgi R, Petrov DA, Fraser HB*. Human-chimp hybrid cells reveal gene regulatory evolution underlying skeletal divergence. Nature Genetics, 2021.

 

Agrant-Tamir L, Waldman S, Martin M, Gokhman D, Mishol N, Eshel T, Cheronet O, Rohland N, Mallick S, Adamski N, Lawson AM, Mah M, Michel M, Oppenheimer J, Stewardson K, Candilio F, Keating D, Gamarra B, Tzur S, Novak M, Kalisher R, Bechar S, Eshed V, Kennet D, Faerman M, Yahalom-Mack N, Monge JM, Govrin Y, Erel Y, Yakir B, Pinhasi R*, Carmi S*, Finkelstein I*, Carmel L*, and Reich D*. The Genomic History of the Bronze Age Southern Levant. Cell, 2020.

 

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Gokhman D, Nissim-Rafinia M, Agranat-Tamir L, Housman G, García-Pérez R, Lizano E, Cheronet O, Mallick S, Nieves-Colón MA, Li H, Alpaslan-Roodenberg S, Novak M, Gu H, Osinski JM, Ferrando-Bernal M, Gelabert P, Lipende I, Mjungu D, Kondova I, Bontrop R, Kullmer O, Weber G, Shahar T, Dvir-Ginzberg M, Faerman M, Quillen EE, Meissner A, Lahav Y, Kandel L, Liebergall M, Prada ME, Vidal JM, Gronostajski RM, Stone AC, Yakir B, Lalueza-Fox C, Pinhasi R, Reich D, Marques-Bonet T, Meshorer E*, Carmel L*. Differential DNA methylation of vocal and facial anatomy genes in modern humans. Nature communications, 11 (1189) (2020).

 

 

Gokhman D*, Mishol N, de Manuel M, de Juan D, Shuqrun J, Meshorer E, Marques-Bonet T, Rak Y, Carmel L*. Reconstructing Denisovan Anatomy Using DNA Methylation Maps. Cell, 179(1), 180-192. e10 (2019). 2nd place for “Breakthrough of the Year” by Science Magazine.

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Gokhman D, Kelman G, Amartely A, Gershon G, Tsur S, Carmel L*. Gene ORGANizer: linking genes to the organs they affect. Nucleic Acids Research, 45(W1):W138-W145 (2017).

Selected as one of the Top Tools of 2017 by LabWorm.

 

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Gokhman D, Malul A, Carmel L*. Inferring Past Environments from Ancient Epigenomes. Molecular Biology and Evolution, 34(10), 2429:2438 (2017).

 

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Racimo F, Gokhman D, Fumagalli M, Hansen T, Moltke I, Albrechtsen A, Carmel L, Huerta-Sanchez E, Nielsen R*. Archaic adaptive introgression in TBX15/WARS2. Molecular Biology and Evolution, 34(3), 509:524 (2016).

 

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Gokhman D, Meshorer E, Carmel L*. Epigenetics: it’s getting old. Past meets future in paleoepigenetics. Trends in Ecology and Evolution, 31:290-300 (2016).

 

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Livyatan I, Aaronson Y, Gokhman D, Meshorer E*. Systematic identification of gene family regulators in mouse and human embryonic stem cells. Nucleic Acids Research, 44:4080-9 (2016).

 

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Livyatan I, Aaronson Y, Gokhman D, Ashkenazi R, Meshorer E*. BindDB: An Integrated Database and Webtool Platform for ‘‘Reverse-ChIP’’ Epigenomic Analysis. Cell Stem Cell, 17(6):647-8 (2015).

 

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Gokhman D, Lavi E, Prüfer K, Fraga MF, Riancho JA, Kelso J, Pääbo S, Meshorer E*, and Carmel L*. Reconstructing the DNA methylation maps of the Neandertal and the Denisovan. Science, 344:523-527 (2014). "Breakthrough of the Year" by Archaeology magazine.

 

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Gokhman D, Livyatan I, Sailaja BS, Melcer S, Meshorer E*. Multilayered chromatin analysis reveals E2f, Smad and Zfx as transcriptional regulators of histones. Nature Structural & Molecular Biology, 20: 119-126 (2013). 

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* corresponding author